Our Publications

A goal-driven framework for elucidating the neural control of movement through musculoskeletal modeling

Muhammad Noman Almani, John Lazzari, Andrea Chacon, and Shreya Saxena

bioRxiv, 2024

Disentangled multi-subject and social behavioral representations through a constrained subspace variational autoencoder (CS-VAE)

Daiyao Yi, Simon Musall, Anne Churchland, and Nancy Padilla-Coreano, Shreya Saxena

eLife, Jul 2023

Motor deficit and lack of overt dystonia in Dlx conditional Dyt1 knockout mice

David Berryman, Jake Barrett, Canna Liu, and 7 more authors

Behavioural Brain Research, Jul 2023

Region-based conversion of neural activity across sessions

Woohyun Eum, Carlton Smith, and Shreya Saxena

In 2023 11th International IEEE/EMBS Conference on Neural Engineering (NER), Jul 2023

Neural Correlations Across Mice During Spontaneous and Task-Related Behaviors

Daiyao Yi, and Shreya Saxena

In 2023 11th International IEEE/EMBS Conference on Neural Engineering (NER), Jul 2023

Unsupervised Human Activity Recognition Learning for Disassembly Tasks

Xinyao Zhang, Daiyao Yi, Sara Behdad, and 1 more author

IEEE Transactions on Industrial Informatics, Jul 2023

Artificial neural network-based rapid predictor of biological nerve fiber activation for DBS applications

Justin Golabek, Matthew Schiefer, Joshua K Wong, and 2 more authors

Journal of Neural Engineering, Jan 2023

Behavioral Classification of Sequential Neural Activity Using Time Varying Recurrent Neural Networks

Yongxu Zhang, Catalin Mitelut, David J. Arpin, and 3 more authors

bioRxiv, Jan 2023

Mesoscale cortex-wide neural dynamics predict self-initiated actions in mice several seconds prior to movement

Catalin Mitelut, Yongxu Zhang, Yuki Sekino, and 6 more authors

eLife, Nov 2022

Motor cortex activity across movement speeds is predicted by network-level strategies for generating muscle activity

Shreya Saxena, Abigail A Russo, John Cunningham, and 1 more author

eLife, May 2022

Neuroscience Cloud Analysis As a Service: An open-source platform for scalable, reproducible data analysis

Taiga Abe, Ian Kinsella, Shreya Saxena, and 8 more authors

Neuron, May 2022

Next-generation brain observatories

Christof Koch, Karel Svoboda, Amy Bernard, and 13 more authors

Neuron, May 2022

Motor cortical influence relies on task-specific activity covariation

Claire L. Warriner, Samaher Fageiry, Shreya Saxena, and 2 more authors

Cell Reports, May 2022

Recurrent neural networks controlling musculoskeletal models predict motor cortex activity during novel limb movements

Muhammad Noman Almani, and Shreya Saxena

In 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), May 2022

Modeling the behavior of multiple subjects using a Cauchy-Schwarz regularized Partitioned Subspace Variational AutoEncoder (CS-PS-VAE)

Daiyao Yi, and Shreya Saxena

In 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), May 2022

Uncovering the effect of different brain regions on behavioral classification using recurrent neural networks

Yongxu Zhang, Catalin Mitelut, Greg Silasi, and 4 more authors

In 2021 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), May 2021

Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data

Shreya Saxena, Ian Kinsella, Simon Musall, and 8 more authors

PLOS Computational Biology, May 2020

Chronic, cortex-wide imaging of specific cell populations during behavior

João Couto, Simon Musall, Xiaonan R. Sun, and 8 more authors

Nature Protocols, May 2020

Performance Limitations in Sensorimotor Control: Trade-Offs Between Neural Computation and Accuracy in Tracking Fast Movements

Shreya Saxena, Sridevi V. Sarma, and Munther Dahleh

Neural Computation, May 2020

Towards the neural population doctrine

Shreya Saxena, and John P Cunningham

Current Opinion in Neurobiology, May 2019

Machine Learning, Big Data, and Neuroscience

BehaveNet: nonlinear embedding and Bayesian neural decoding of behavioral videos

Eleanor Batty, Matthew Whiteway, Shreya Saxena, and 10 more authors

In Advances in Neural Information Processing Systems, May 2019

Modulations in Oscillatory Activity of Globus Pallidus Internus Neurons During a Directed Hand Movement Task—A Primary Mechanism for Motor Planning

Shreya Saxena, Sridevi V. Sarma, Shaun R. Patel, and 3 more authors

Frontiers in Systems Neuroscience, May 2019

A novel variational family for hidden nonlinear markov models

Daniel Hernandez, Antonio Khalil Moretti, Ziqiang Wei, and 3 more authors

arXiv preprint arXiv:1811.02459, May 2018

Reconstructing Neural Activity and Kinematics Using a Systems-Level Model of Sensorimotor Control

Shreya Saxena, Raina D’Aleo, Marc Schieber, and Munther Dahleh, Sridevi V. Sarma

In 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), May 2018

Weighted Population Code for low power neuromorphic image classification

Antonio Jimeno Yepes, Jianbin Tang, Shreya Saxena, and 2 more authors

In 2016 International Joint Conference on Neural Networks (IJCNN), May 2016

A systematic approach to selecting task relevant neurons

Kevin Kahn, Shreya Saxena, Emad Eskandar, and 6 more authors

Journal of Neuroscience Methods, May 2015

Analyzing the effect of an integrate and fire encoder and decoder in feedback

Shreya Saxena, and Munther Dahleh

In 53rd IEEE Conference on Decision and Control, May 2014

Real-Time Decoding of an Integrate and Fire Encoder

Shreya Saxena, and Munther Dahleh

In Advances in Neural Information Processing Systems, May 2014

Aggregate Input-Output Models of Neuronal Populations

Shreya Saxena, Marc H. Schieber, Nitish V. Thakor, and 1 more author

IEEE Transactions on Biomedical Engineering, May 2012

Modulations in the oscillatory activity of the Globus Pallidus internus neurons during a behavioral task-A point process analysis

Shreya Saxena, John T. Gale, Emad N. Eskandar, and 1 more author

In 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, May 2011

Point process models show temporal dependencies of basal ganglia nuclei under Deep Brain Stimulation

Shreya Saxena, Sabato Santaniello, Erwin B. Montgomery, and 2 more authors

In 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology, May 2010

Measuring micromotion around a loaded hip stem using μCT imaging

M. Gortchacow, S. Saxena, M. Wettstein, and 2 more authors

Computer Methods in Biomechanics and Biomedical Engineering, May 2009